NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334854_003034

Scaffold Ga0334854_003034


Overview

Basic Information
Taxon OID3300033829 Open in IMG/M
Scaffold IDGa0334854_003034 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 715 P2 1-5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4107
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3534Long. (o)19.0472Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008510Metagenome / Metatranscriptome332Y
F044602Metagenome / Metatranscriptome154Y

Sequences

Protein IDFamilyRBSSequence
Ga0334854_003034_3452_3619F008510GGAGGMKQAIRISILMCGLVGTYVAAAVPQVPAPDGGPILTCPPQQLESKCSSGMPPMMK
Ga0334854_003034_462_941F044602GAGGMRRFALAVALIFPVTLLAGKNPSDYPLQIQVIESHWNRPINAVDRRYGGVEGWGRGNIMDGNSVRGFDFSYSAAEPFHRTVGGGRYLAKWKKEGLKMELLIGEIGAPDKFHTYDLKTTVRDDVYVRGHDGAVAISQEEFKARAKDKDNEKDKDTDSDKQ
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