NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334854_000017

Scaffold Ga0334854_000017


Overview

Basic Information
Taxon OID3300033829 Open in IMG/M
Scaffold IDGa0334854_000017 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 715 P2 1-5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)92870
Total Scaffold Genes93 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)55 (59.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3534Long. (o)19.0472Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003120Metagenome / Metatranscriptome506Y
F019610Metagenome / Metatranscriptome228Y

Sequences

Protein IDFamilyRBSSequence
Ga0334854_000017_18067_18183F019610N/AMLLAVPAIALAYPVVTILLPALIRAALPDVVRSVLSLM
Ga0334854_000017_43098_43283F003120N/AMAQGNVIFVATKVVSKPATVKFKTKSGETVSIKAIKTFEQKTSLGPRAKKKSKRNEAHLS

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