NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334828_129878

Scaffold Ga0334828_129878


Overview

Basic Information
Taxon OID3300033822 Open in IMG/M
Scaffold IDGa0334828_129878 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 714 S1 5-9
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)596
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030114Metagenome186Y

Sequences

Protein IDFamilyRBSSequence
Ga0334828_129878_2_595F030114N/AEDTSKPFHLTYHLRQDRYFIVPSTSVNFRAIPPLGVPAIRASEKSTEPLDIGPAGEMDYRVRLQFPANYTVHTPTAVKMSRDYGDYSSNYSQSKGVLEGVRQLNVKVNELPAARRADYESFRNATQSDQDQLLSCTILTPSGPAAGLASKIEGTPEELQKAGVKALQSKDYRTAIDLLKRAVSADAGPNASLRDGWYD

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