NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334828_000002

Scaffold Ga0334828_000002


Overview

Basic Information
Taxon OID3300033822 Open in IMG/M
Scaffold IDGa0334828_000002 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 714 S1 5-9
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)248453
Total Scaffold Genes217 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)153 (70.51%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027752Metagenome / Metatranscriptome193Y
F075092Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0334828_000002_157754_158542F027752N/ALANAGVLYDVAVRPVDQSELALSSPNAPPVTPVVTQYFVEGGKVRAGGPKAKTAYVFKDGTMYVIDNTSRVVHVLRHATLSQLAAHYTEAVKQLRDAVASAAPDDRAEAERKANDMQVVSDRIRQPVAREFRVTVRFESVDGHACRIWEEREREAKRLELCVAPPASVPGGTEILSGMKTLSQFRQGSNFALGVDFGLSQWWPDIDTLGGIPLLIREYKYDSEIAEVMLSGMRQGVPNTGQFEMPEGYQSQDGPDYAQWYVR
Ga0334828_000002_167944_168138F075092GGGGGMHRRKVMVAAAAIFAIGVAFAAQPISESADRGNEAMQERDPWVPGTNMLMSAHDSGLVSLAPPR
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