NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334818_000314

Scaffold Ga0334818_000314


Overview

Basic Information
Taxon OID3300033821 Open in IMG/M
Scaffold IDGa0334818_000314 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 713 E-2-X0
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12085
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (13.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3533Long. (o)19.0466Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011397Metagenome / Metatranscriptome291Y
F020177Metagenome / Metatranscriptome225Y
F022996Metagenome212Y

Sequences

Protein IDFamilyRBSSequence
Ga0334818_000314_11099_11461F020177N/AMDNIDLNNTYWDRLQGYVSELRVDARWILRKNDDDRSYGSLRIVSHPDLPYGHLRAIFTYVIKIRPKTKAEKMQSTEDYQMEITELEVYSVGDDIKTETQTYEAPFKELEEMFGVKIFKK
Ga0334818_000314_6025_6294F011397N/AMKDFELLKRTYPISRHDRYCDGYDYIMKNSTEEERKEWGLDFNELQRIIKKDEKYIYQVAKEDREFKIMCLCFNNYAIIRKFIFKLEDE
Ga0334818_000314_8425_8751F022996N/AMETIVKINILNLKEEIKTMAEKQKFYKNQRKTVKLVGERKMSASDATYEHQRNGEKLRVMYAVYGLLRGKKFSEIENHYPEENHPLNKLQYKIDTLLSKYQLQEVKAE
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