NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314865_093621

Scaffold Ga0314865_093621


Overview

Basic Information
Taxon OID3300033806 Open in IMG/M
Scaffold IDGa0314865_093621 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_50_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)786
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NamePeru: Loreto
CoordinatesLat. (o)-6.3272Long. (o)-74.8136Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032553Metagenome / Metatranscriptome179Y
F087397Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0314865_093621_111_272F032553GGGGGVKQALERLAGVKVQAVDRTKNEARVTLEGAATTTDQMIAAIQGAGKFQAKLAA
Ga0314865_093621_655_786F087397N/ALLKKAHLRRWRARALAAAYPEYASLGASRAALHLDLFEQPGQK

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