| Basic Information | |
|---|---|
| Taxon OID | 3300033550 Open in IMG/M |
| Scaffold ID | Ga0247829_10801810 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 784 |
| Total Scaffold Genes | 2 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Caldimonas → Caldimonas tepidiphila | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From Agricultural Site In Penn Yan, New York, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: New York | |||||||
| Coordinates | Lat. (o) | 42.673 | Long. (o) | -77.032 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F012683 | Metagenome | 278 | Y |
| F013213 | Metagenome / Metatranscriptome | 273 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0247829_108018101 | F012683 | N/A | DVSRVALLIDLSLPALQARVRAGDRIQPAWGRFVERVSGYGLPSFPRVRHLRTRGPLATLVVAYRS |
| Ga0247829_108018102 | F013213 | N/A | MSMKSWVLHRVQGLGGVAGRGDLPPRERGHEPDLDGDALPTRSDGSGAADALRPGADLGVYAPLIGAVRDELEHFVVSHVRLHVVIADRDRFLLTSIGVRSPGGTEARDLLQQFMHEFKPEQVKRYLAREVIGRLPNAGVIDLSLFGGLSDLETNDRGRDDGEYRELLAALRTTPTIVRPYEVSV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |