NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316616_100671638

Scaffold Ga0316616_100671638


Overview

Basic Information
Taxon OID3300033521 Open in IMG/M
Scaffold IDGa0316616_100671638 Open in IMG/M
Source Dataset NameWetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D1_B
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1234
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Wetland Microbial Communities From Old Woman Creek Delta, Ohio, Usa

Source Dataset Sampling Location
Location NameUSA: Ohio
CoordinatesLat. (o)41.3776Long. (o)-82.5117Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003687Metagenome / Metatranscriptome473Y
F015587Metagenome253Y

Sequences

Protein IDFamilyRBSSequence
Ga0316616_1006716382F003687AGGAMTPKAVEYLLTQDARLLARRDAPCIDQELEMQRQAALELFFEWQDGMRQFQDLVPFVAIVQRKVDLNRDLLRWERKQLEQD
Ga0316616_1006716383F015587N/AMTALNIRKNIAAALVNTAAAIENAKVPTKADMSSKLHDIRCRAAALMMPNDMAFVITPKNNI

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