NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310811_10404979

Scaffold Ga0310811_10404979


Overview

Basic Information
Taxon OID3300033475 Open in IMG/M
Scaffold IDGa0310811_10404979 Open in IMG/M
Source Dataset NameSoil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1491
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Experimental Microcosm In Duke University, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)36.0Long. (o)-78.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F073623Metagenome120N
F081801Metagenome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0310811_104049791F073623GGAGGMHSRLAPSGSGGSRLRRGMVRACSVALLLGGLSARAQVVRIPPSLLLPNYDRVQPGLIEALEAGAVIARARNAPAVAYNPAGIAVTDRSVLNASAQGYQLTALGGTGFEQASPVSSFESIPSFLGLVLGRDVLDWESVRLGFAVVTPIHWDQSAIASAIPQEGQRASYTVHSSFTTVVPTFAVGWAVSSSVRLGASIEFPYTSISNEGELSGELTTATASQGSIQNVALGGSTLDMVAVVGAQWTALPWLQLGLTFRSPGLKLLSSGAVDYESLTAANGGSHHVFFDDPDARFEFRTPMEISVGAAVDVGPVELELDLRWHDGTHTYQLLSSDQTGRVVDTSSGAPVVSTFAFGGVPYRARPVLNGSLGGHVTLTPAISLSAGVYLDQS
Ga0310811_104049792F081801N/AEAGQVTGLLALLVILSTDAGNFATPDGGVRSPPPASRSAEDEEIIQNLDLLEHLAESQELEMMLELEARKGKQDR
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