NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326726_10031683

Scaffold Ga0326726_10031683


Overview

Basic Information
Taxon OID3300033433 Open in IMG/M
Scaffold IDGa0326726_10031683 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4609
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.3286Long. (o)-76.4792Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000309Metagenome / Metatranscriptome1327Y
F004589Metagenome / Metatranscriptome432Y
F010187Metagenome / Metatranscriptome307Y

Sequences

Protein IDFamilyRBSSequence
Ga0326726_100316831F000309GGAGMKSNGNRSLERILESAIVVSWADLMPGAQTGLIHIEYGFAAGGTLDYLKLWSSITRGQWLLACEYWMSASTFHSTGVHFDNGYQSEGLAHILESVMQHQTAFSLPADLGRQGLLQIPTPTQEESVAAAASVSEALDRVSSAPAQ
Ga0326726_100316833F010187AGGAGGMHPEDLMKPDLFSEIVLLGSGGLIFVSLLLILVTALTRV
Ga0326726_100316836F004589GAGGMRKQYLHLSAYSCDKCRGPVVSGSIAVRENEISKETDIRQVGAICLTCGHRQSRGTEAGVTRAFAPVQWEPVKAIVASHI
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