NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326726_10001188

Scaffold Ga0326726_10001188


Overview

Basic Information
Taxon OID3300033433 Open in IMG/M
Scaffold IDGa0326726_10001188 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24267
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (65.38%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.3286Long. (o)-76.4792Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003343Metagenome / Metatranscriptome493Y
F027281Metagenome / Metatranscriptome195Y
F056024Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0326726_1000118813F056024N/AMFRRRLVRQFPVFFTFNVLVPARDVTLYFLPQSGNRYATVFWWGEAAAIVLALGIVFETSWHFIRPYPFLRLFLRVLWISGVIAAAAALALLLWTNGPAGTDVALEWIILTERSARFLQVCLLIVAIALMSRLGLSWQNYSVGIAAGCGVYAALDLVLLELRAHLHAVTDSAFVLMRSAAYNLGVAIWTFYFLRPRSGKPVGGLLGTDLANWNDALTEHIDKWYRR
Ga0326726_1000118814F027281GAGMVSTLTILFASLLSLFLVWVVLRPGLPPIKSLEDWEGKKHDVDPEVFRVLLDPSQEKYLQQSLPPGEFRLYQRKRLVLALRLLDLVGENTAMLLKLGQLARTEANSHLANEAEELIYGALWLRVNLLLVRPCLWLKWLFPGWALSLPAVEMPYAELLAYLNRIRQQRQWDLQQALMAG
Ga0326726_1000118824F003343GAGMKPWSWDKQLGLASPLKCAANQSAQTNNPSMDEAEDEVGLDASHHTRIFLRGGENLFSLTSSFIGRV
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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