NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326729_1004293

Scaffold Ga0326729_1004293


Overview

Basic Information
Taxon OID3300033432 Open in IMG/M
Scaffold IDGa0326729_1004293 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF6AY SIP fraction
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2786
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.3286Long. (o)-76.4792Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035718Metagenome / Metatranscriptome171Y
F097111Metagenome / Metatranscriptome104Y
F099819Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0326729_10042933F097111GGAGGMAGGVIVGILRERHADHIVLRDGTEVFLSAKQATSEFAVGTSLTVSYTVKKGGKKMADSIWRCD
Ga0326729_10042934F099819N/AVTDPTRPWWRSGALAALLALASVSSVGAIEPQALVGAWVGEWNNGLGVSDAVDLTVTRVSGDRVEGIVYWHATPGTPSENRDLLFVGTLVGSTLSVRGAPTVPGSPAMSFSCSISRDGTRMDGFFQGAGRSAVSFARKQP
Ga0326729_10042936F035718AGGAGGMTKFIQLCASQNNLFALDEEGDVYQYHFNVRTWVKLTATRELTATRELPAEGAA
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