NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214471_10118801

Scaffold Ga0214471_10118801


Overview

Basic Information
Taxon OID3300033417 Open in IMG/M
Scaffold IDGa0214471_10118801 Open in IMG/M
Source Dataset NameSoil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT142D155
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2177
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil → Soil Microbial Communities From Uranium-Contaminated Sites Across The Upper Colorado River Basin Region

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)42.9888Long. (o)-108.3994Alt. (m)Depth (m)155
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002666Metagenome / Metatranscriptome539Y
F003507Metagenome / Metatranscriptome482Y
F009760Metagenome / Metatranscriptome313Y

Sequences

Protein IDFamilyRBSSequence
Ga0214471_101188011F002666AGGMTAQCATRGTALQAHAQPLPHDLQQVRRRFGRQCRGMGNVLVTLGRQTETPWLELGQQVLPLARAVQECLHGATPRSEDQRARLDTQFMAALEAHQRIEHQSRRLTQGKALPHGKIVNAYDPTIAPMCTGNSHGPAPCGRKPGMIAEPAAGFIVALHLPVGHPSDASYVPPVVDNVEQAIARVGTRPTPALHALAGDLALNDAALREALQARGMLTVGIPKTVDPLTPLPTPEEVLRSLNEAGLHRTRTPSQVHLACACGDSRPVVESIIASLLCRGAGRLAYKGHRGAIVQTGMAVMAHHAATLVRIHEYRLSTRARKLRRRLRLRCRQVNQCHASIH
Ga0214471_101188012F003507N/AMCSRLRTDVAVMDACGIGVVQVDGSQEHVVLPEVLAQCRSRLDDALMEARLAIQAAAAMEAGLVSPAHLVVDTFPSEQGSPRVHAAATRYKAQQQSSRSSRP
Ga0214471_101188013F009760AGGAGMPILRDLQHGLTGRGPGLQVADFVPATHPLRPWAETCPWAALVAAVDRRFAQRFPTPTTRGRPPVSTRVLVALE
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