| Basic Information | |
|---|---|
| Taxon OID | 3300033417 Open in IMG/M |
| Scaffold ID | Ga0214471_10092807 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT142D155 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2482 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil → Soil Microbial Communities From Uranium-Contaminated Sites Across The Upper Colorado River Basin Region |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wyoming | |||||||
| Coordinates | Lat. (o) | 42.9888 | Long. (o) | -108.3994 | Alt. (m) | Depth (m) | 155 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002666 | Metagenome / Metatranscriptome | 539 | Y |
| F003507 | Metagenome / Metatranscriptome | 482 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214471_100928072 | F003507 | GAGG | VDGSQAHVVLPEVLAQFRSRLDAPLMEELLAIQAATAMEDGLVSPAHLVVDTFPSEQGSQRVNDAATLYKAQKKSSSSSRP |
| Ga0214471_100928073 | F002666 | GAG | VQAQQLQHDLQRIMRRFGRQCRGMGNVLVTLVRQTETQLLARGHQVLPLARAVQERLHNLTQLSEEQRARLSTQLTAALEAHHQIEHQSRRLTQGKAVTHCKIVNAYDPTIAPICKGKSNCPAQFGRKPGIVAEPAAGFIFAVHLPVGNPSDASYVQPLVDHVQQAIARVATGPTPAIRSLAGDLAFNDASLREALHAQGILTVGIPKTVDPLTPFPFPEDVLRILNEARLSSTPTPAQVHLACACGYSRPVVESIIASLLCRGAGCLTYKGHRGALVQMGMAVMAHHAATLVRIHEYRLSKRARTFRRRLRLRCRKVNQCNA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |