NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316622_100434737

Scaffold Ga0316622_100434737


Overview

Basic Information
Taxon OID3300033416 Open in IMG/M
Scaffold IDGa0316622_100434737 Open in IMG/M
Source Dataset NameWetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D5_C
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1483
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Wetland Microbial Communities From Old Woman Creek Delta, Ohio, Usa

Source Dataset Sampling Location
Location NameUSA: Ohio
CoordinatesLat. (o)41.3778Long. (o)-82.5111Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010688Metagenome / Metatranscriptome300Y
F051790Metagenome / Metatranscriptome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0316622_1004347371F051790N/AMADTKITALTAITTVDPAVDVLPIVDVSDTTMAASGTT
Ga0316622_1004347375F010688AGGAMMVIAVSPKGHHRNGGAPSSHSACGCEEADNNAPMISIPVEALSTDMEDGQQAMPEVGDEVVLDDVRGVLKKLENGEAYVEIRSVNGMPAEYENKDDKEMYSKKPMDKESMMKMAADYDSEMES

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