NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326727_10002246

Scaffold Ga0326727_10002246


Overview

Basic Information
Taxon OID3300033405 Open in IMG/M
Scaffold IDGa0326727_10002246 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)67232
Total Scaffold Genes65 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)55 (84.62%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022135Metagenome / Metatranscriptome215Y
F040976Metagenome / Metatranscriptome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0326727_1000224623F022135GAGGVSRNLSRESRVESRKVLNVSTLEQYVILSEAKNLCSCFVLVLRRFFASLRMTAPGGDITMKKRHVKLAVLLLPLCLPVFATDKKDLSERYKEKYLVVLRDGLAVGTCADLPEIPSGNALDVRIVGESAGFFPQTGASAAMTRCGEIIPEPLHKGEIVFARFTWFRRLRGGYFTITVQNLAPHQVKRGGGASRHEHLKYGRANLIFETSDPQDYDAVASLVEKWLRPFNTRAEAAQFGNTATGVYVKEVKLGMSYAEVEAALGLPQTRVDLGAKVLYKYKDMTVEFHDGKVTDVR
Ga0326727_1000224647F040976AGGMVARSVVVGWAALVALSYLAERPLLLLIAPVVGAHWVATASLALDCLKLAATGAAIGRLHRQAPLPQVLAFAATLCLLNFEALLPLDVPWLIRLAMDAVNDARYWGSLATTAAQDVLLFGSLIAGGLLSRRPQKPLTLFDESPR
Ga0326727_1000224650F040976AGGMVARSVVVGWAALVALSYLAERPLLLLIAPVVGAHWVATASLALDCLKLAATGAAIGRLHRQAPLPQVLAFAATLCLLNFEALLPLDVPWLIRLAMDAVNDARYWGSLATTAAQDVLLFGSLIAGGLLSRRPQKPLTLFGESPR
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