NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10228367

Scaffold Ga0326728_10228367


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10228367 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1815
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052342Metagenome142N
F062373Metagenome130N
F086512Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0326728_102283671F052342AGGAGMQVFFARWSSGRKVKWRSLQWAEFKKFDRQLGYDCPASVYCDVYRAVLLEGPPLDGDPVYQAPAGLVEWIARSLLDSNPFNGEYKDVKRALDMKRVELKSSWLNSAKSIIAGIFRYTFEEIEEWDAEMFYERLACAEFVCGRKLEPGDPDKSDAQHPGKKTGPPEGPPKPAKRELSPAQQKVVNRVVNSRK
Ga0326728_102283672F086512AGGAGMSEPTKEQPQITPFEFLQTFPEAPSLEQIEQWKQQAPGARLRIWHSSDGKRVYVLRAIGGQELAQLQASLPANIPPEKVPGEVQILLAIRCCVWTSSTIDHKLSDLTLKGAGAGLPQTLQEIIYQLSDYMDPVDISRFSADL
Ga0326728_102283673F062373N/AQLYIGNLFIDELNSLQFAYQGNRIPMFGYCSRSADAFGTGRLLVQGQLAINFVTEGYLYTVLKEFSKINTQPVQASATGQAGAQIASLVQQSQQITNAMQGALSPSATASYQAQLNIISQQIQSLAAQGGPDAINAAKMSATAQGDTPNAIVLDIPFDIHCELTGAGRTVERILRHCLLISNEQVYDQSGQTLLDCYGFVARSAN
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