NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10196101

Scaffold Ga0326728_10196101


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10196101 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2047
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002761Metagenome / Metatranscriptome531Y
F003859Metagenome464Y
F007120Metagenome357Y
F076760Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_101961011F076760AGGAGGMSLVTRYRLFWAALVAALLGLAFWKTSQSYPHKSRLWRFGKAAIDAGLVILLAIYAPALLLMYVVVWLTSPFKNKIVQATAAFASVLAVTHLAGAVFEAVAVIG
Ga0326728_101961012F007120AGGAGGMKTAITVLSVLCAVIAYYFGLRYFSGCDLGFTPAKQYVRNWLRTLLHTEVTAAREAGATPQPVAEQAA
Ga0326728_101961013F002761AGGAGGMTFTPSATSSFSASAVFWGMIWATLGKLNELAHFVGFKQANPRQTMLRWINAHKVVTVTLTEAANYSVHGISSPLGVTFALGGTLVNAFMIMFIVPIWCRLSKLESL
Ga0326728_101961015F003859AGGAGMNDANAERTSTPGRSWPGASLYNSVMLGWHWRQLKWAVVAASDAAQGHEANGLPPGSIEFKTLYDEVADKVQEYSVESGDPIAILKAKLPAFCALEGLANPAATVPRNKAGLTLGVLILALLAPIGIGALIGLGTGMAHWIAHLFA
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