NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10059728

Scaffold Ga0326728_10059728


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10059728 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5317
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016480Metagenome / Metatranscriptome247Y
F039579Metagenome163Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_100597286F016480AGGAGMNREFQQYRFARIEAQNITRARLEAQFKDGIGGLEEVEKVIERLMMTEPTCTPWRKSGVERAGSRDGTRMAALEFYWAHRRRRPPSSES
Ga0326728_100597287F039579AGGAGMTEEIKIQPTAGEPSVAVPSSPQGHTGSALRGAERNDRKPTVASAALLELLGSKKIPPLDGVQMLALLHYLFNAADRALRFQIAEVVYRYDHDHPNAQDLFLACTLPSAEKAARRKAEKLFVHPSDWQVELMYDGAVAAAIEMFQLNPSLSSIPNAFQRYVVRGLSRGMLRSYFMREENSRIRPVGDVRAVRTRKTVVRNTVEREIIAKELLDQVTNYANVRPPVRATLQCIAALGPDFALKEHAYTASGDPDKWKRDRDRRPILDPDAIAEAMGIPKRDVHRYLRQARVILRQAFNADGRLFQIH
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