NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0326728_10041515

Scaffold Ga0326728_10041515


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10041515 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7148
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003859Metagenome464Y
F004817Metagenome422Y
F007120Metagenome357Y
F015428Metagenome254Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_100415152F004817AGGAMPKTAAVVQLPEILRNKSSHLVKLAGKIDSFSLLLREAPEGELKRSIEEQFHTMVFATRKEIRKYCPRYRSLPGEGILDFNTDCTSGQLEPGDIGKAPPPKRGRLCGNCCFFAGIPEEHVHQMTLIPASQDLVLVV
Ga0326728_100415153F003859AGGAGMDEPNAEKHTSLECTSIPGRYWPGASLYKSLKLGWHWRRLRWAVVAASEAAQGHEASGLPPGSREFKTLFTEVASKVQEYSTKSGEPLDTLKARLPALCALERLANPTPAVPRNKTGLTLGILIAAVLGPIGIGALIGLGTGMAHWIAHLFA
Ga0326728_100415154F015428AGGAGGMTGILELFLLLKLGSGIGFLVTWRNRLLASKVNYFHPPHNRKSPIDKLVRSQTGSVVTRQDRLYAKLADGLTALVRRLVMLDAFRQLMRALALPGSPLRRKLSRRKRP
Ga0326728_100415157F007120AGGAGGMKTLIIILSAACAVVAYYFGLRYFTGQDLGFTPAKKYVRDLAKNLLHTEVTAAREAGTTPASTTEQTA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.