NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10020084

Scaffold Ga0326728_10020084


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10020084 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12821
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (58.33%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F061450Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_1002008412F061450GAGGLLPIVVVVALKLADVAAGATATDAGTVRLALVLVRVTVAPPAGAGCVTVTVQVLEEFGPRLVGLQTSEETSTGATRLMLALAELLLYAAVRVAL
Ga0326728_1002008415F061450GAGGLLLIAAVPALKVAVVAAAATVTDAGTVRVALVLLRVTLAPPVGAACVRDTVQVLDEFGPRLVGLQASEETSTGATKLMPALAELPL
Ga0326728_1002008416F061450GAGGLLLIAAVPALKVADVAAPATATDAGTVRVALVLVRVTVAPPVGAGWVRVTVQVLDEFGPRLVGLQTSEETSTGATRLMLTLAELLL
Ga0326728_1002008420F061450N/ALLPMVVVLALKLAAVAACATATDAGTVRVALVFVRVTVAPPTGAGWVRVTVQVLEALGPRLVGLQTSEETSTGASRLIAALAELLL
Ga0326728_1002008421F061450N/ALLPMVVVLALKVAAVAASTTATDAGTVRVALVFVRVTVAPPVGAAWVRVTVQVLEALGPRLVGLQTSEETSTGATRLMLALAELLL
Ga0326728_1002008423F061450N/ALLPMVVVLTLKVAAVAAGATATDAGTVRVALVLVRVTVAPPAGAGWVRVTVQVLEALGPRLVGLQTSEETSTGASRLIVALAELLL
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