NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10002770

Scaffold Ga0326728_10002770


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10002770 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)57247
Total Scaffold Genes51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)40 (78.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001969Metagenome / Metatranscriptome609Y
F009255Metagenome / Metatranscriptome320Y
F076848Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0326728_1000277039F076848N/AMLSDAELTDLRSFWMWEPLKEKWDFIRDWEEHKVEAMKKFEEYAFGRGGGLGQEEKRHLPLSRWLQ
Ga0326728_1000277040F001969AGGAGMQNETNTKAEIIALLDGRTQVSLENIRQFILDLDERDYMEFLYPLDPGFAGELDERSAEAEGMLETLRDIEGTLRGLDQGKIKVQ
Ga0326728_1000277051F009255GGAGGMPTPANHGRIICSRGRRQRSRLQPHATRRPARLATAGQLMPQGTGLLLPRLAGVPLIHRVVADDRMAVMLAKALAELDIAVPVDWKKAECDPTSFTRFTLERWIRAHGGSAIRRRFLLVASISDAPCDWAERDES
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