NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10002410

Scaffold Ga0326728_10002410


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10002410 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)62370
Total Scaffold Genes50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)38 (76.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004161Metagenome / Metatranscriptome450Y
F046144Metagenome / Metatranscriptome151N
F093119Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_1000241011F004161AGGTGGMTQTRCDVLSCVEHERLEFELLEVRTRGQYLTRLRSISREERAEWDRREQRALASLVDHELEHGCNG
Ga0326728_100024102F093119N/AMPKDMMPTRNRSAGVTAAAMLAVLGSVIAFFLWGWLFLPLVNSPPNSNGQHAYQAHPLPFALVALIPPFLVALGLRTGIGLFQLRPWARKAALLWAAIALAFCLSMIALRPFETFAIPEHLVTEAESLRQLLAVSIVFMLLPVSIWWLFFFRLKNVVEQFEDRSTTPSSSES
Ga0326728_100024103F046144GGAGMFESPLKQDKESSKTGLWIGIGIVVVLAVVALIYVTSKRSAKGPAPVATLTNVKADPVHDLRVVSAKMDKDFSGTTAMWSVDIKNSSAQLTYSNIAYETTYIGADNRVLLVNQGKIPITIGPGDDQSSQFRDTLYPTGTIWFKIRITDATAAK
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