NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0326728_10002172

Scaffold Ga0326728_10002172


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10002172 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)66490
Total Scaffold Genes66 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)53 (80.30%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000775Metagenome / Metatranscriptome896Y
F000781Metagenome / Metatranscriptome895Y
F007488Metagenome / Metatranscriptome350Y
F009917Metagenome311Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_100021722F000781AGGAGMLTVAQLAPLKDRDPYLYETLTKIVSAVNATSQNAGVDPATPSPAPAPIASLQVQASNGWFDLSIIDPAASRPGLFYFAESDVTPAFSAPRVHFLGAARNLYLQLGNQTLYWRAYSQYIGSQPSAPVSFGSPPIAVAGGGASGPAPLPSNGSGTLPNGLLRGGNGFGTPTGARIVKQTIL
Ga0326728_1000217227F000775GGAGGMKNLNSVFAAYLIGWGAFFLFYVSIAKRTSDLRAEVERLKNSLPCAK
Ga0326728_100021724F007488GGALRVREYDEGDLEALRAIHAAQGFPYEFPDLRNPLFLTKLVLAGDESDPAEGKGIAGAALLRLTAEAYLLLDPKRGTPKQRWQWLLELHEATRRQAWERGLEDVHAWLPPEIATKFGRRLTRLGWVRDDEWTPYCKRLK
Ga0326728_100021729F009917AGGMFSISSAILLAVVSIGAQFVVFLRWIHRRMRDDEINRVFLRDLALCHLPRIYRALYTIAERQGIALEELPIVNYVDLQNGGRRP
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.