NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10000530

Scaffold Ga0326728_10000530


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10000530 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)150059
Total Scaffold Genes129 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)106 (82.17%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028686Metagenome / Metatranscriptome190Y
F041619Metagenome / Metatranscriptome159Y
F075580Metagenome118Y
F104299Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_1000053013F104299AGGAGMVMRRVAVLAGLLLCALQLSQTTLSSPLSAVPTPSAQEMNFTLEGKITEKSAGKLTVSSGENMIFHVLYNDKTVIKKKDGSPGTAQDLHIGTRISVAGDLAESGEITAAKIEIEGEGSGK
Ga0326728_1000053018F041619AGGAGVDRSILDYLQRTRSSRSRSERMNELLRRAILAEQYEVLEREAAEFFAATGKTERAESRAFAAASRRSIARAGE
Ga0326728_1000053037F075580N/AMKVSLAMLLKTHVEKMPENRSLAMLMKTSQLKSLSGDVDENKGVYPM
Ga0326728_1000053049F028686AGGAGMQDKSFKATTIVTPDAANRLVLEAAFNNWAEETKPASILHVHYYHDPDAHVRGYQVVYEEPWMTYLAPETPKEEETARLLV
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