NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10000013

Scaffold Ga0326728_10000013


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10000013 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)793242
Total Scaffold Genes833 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)621 (74.55%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003063Metagenome / Metatranscriptome509Y
F025877Metagenome200Y
F056707Metagenome137Y
F093367Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_10000013153F025877GGAGGVPGIDEKENTWRVRIVDPSKMDKFRVKQITDGVQITLGRVKGTSRWEVQNYIFDKARFKTKNQVTAWLDKHLKAEIQTLLDFKAWNEWKRRFVNAYMQVSEIK
Ga0326728_10000013594F003063GAGGLKAENVFKIAVTYSRVRVFLTSKGWEFQGKDEEIEMDSFSNKKTGKKVFVVDISEDFPVTFLMGALSVPEFSTIASELTPEIQLLEVYSSWEGKPTTIVVAMTEEQVKSMFGRRTKMRKLAVNRTRV
Ga0326728_10000013627F056707AGGAGGLNQKQIEAAAVLMRLFLSGLAFNFDANFHELEEVTKRALLEIETEASS
Ga0326728_10000013831F093367GGTGGMASRNSNVGKLFDFNVRGYGVITHEVRVDYKTWSPVIQILKFTDDEHKGEIDLRFGYCDNTGKLITRPVYLTESQLTDLGKEAAKDPEIKKLLKGFCDQIR
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