NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334722_10056403

Scaffold Ga0334722_10056403


Overview

Basic Information
Taxon OID3300033233 Open in IMG/M
Scaffold IDGa0334722_10056403 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_bottom
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3076
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5107Long. (o)-110.3566Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035947Metagenome / Metatranscriptome171Y
F063990Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0334722_100564032F063990N/AMPQIETWSRLPAAIRDHLVERMRDRNISLDDLNQLRIWIESKPSVPDGLW
Ga0334722_100564033F035947AGGTGGMAKRRRLSDNRVLVELIEEGIEARRQKERAFFALAERFRASSDPDEVKRLGDEMGRFVFG

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