NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10017960

Scaffold Ga0307507_10017960


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10017960 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8086
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (38.46%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F071804Metagenome121Y
F087969Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1001796011F087969GGAVASEAQLDDSTGGELLLGGMIAELQNAWGASSEEYEDLEALAQWAIRKETKLATVSHIQGSPSTKNIQRETTTPRNPDGTYRPTNNVNQNYGDPMELDATRRRPRINISREEFQTRIREPLCLKCAQPGHLARCCPNKDGPKPFNAQTRSWQPAKKTAPWQTRPKIREIEVE
Ga0307507_100179602F071804GGAGVDAGYYPRQVGEKGTLSKNERREHKKTRAVRTGLEGEGSEKNVVPDREALEETILDLRSQLDYASQTIVAKDNDLEQLDKEKEKLQQGYIRSNQRMLQIGGMLWKEGV
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