NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10006557

Scaffold Ga0307507_10006557


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10006557 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17748
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (65.38%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046099Metagenome151Y
F070701Metagenome122Y
F096295Metagenome104Y
F098324Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000655714F096295N/AVQSVNFQKTCTISLFGVPEHSGLVRVALRATFWALLSGLRECCSCSMIGGGAEDDLLIVTRIHSRLSWVAPVESLDTVFGKVQVFCGVPDFIVFW
Ga0307507_1000655717F070701AGTAGGMVPDDRPVDQVDLFRYGVGDLVGTGAEDGEDFERACVISALDKGRAEGFFFRRPLSGRVPLGGKKWSSSAWLIFTGSQAPGGEGNIGVFLGAISCLAVQMLFGEVLERKSAQ
Ga0307507_1000655723F098324GAGMMFYVWFRVSFDTQYVVVIVSRYRMILDMFYVTFQGYRFGSPYGYCLQGSA
Ga0307507_1000655724F046099GGAGMVIVYKAPLSLTSVFKTCYSLDLERAHFDRQSFQYTRSNSYFFSSLRESIKTKHS
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