NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334901_1017014

Scaffold Ga0334901_1017014


Overview

Basic Information
Taxon OID3300033162 Open in IMG/M
Scaffold IDGa0334901_1017014 Open in IMG/M
Source Dataset NameSludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_15_08-R3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2810
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Atribacterota → unclassified Atribacterota → Candidatus Atribacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Sludge → Sludge Microbial Communities From Methane-Producing Bioreactor In Wageningen University, Netherlands

Source Dataset Sampling Location
Location NameNetherlands: Wageningen, Gelderland
CoordinatesLat. (o)51.9691Long. (o)5.6654Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F071725Metagenome122N
F076577Metagenome118N
F093482Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0334901_10170141F076577N/AMEIAFHFGAISYAPSNGKKRREMWKEFKENAIDKRLKYVNPDRRCGHPVNLDTLDYCWGYAHKIDKGEEIGMEELCEGCEFFREEVKNENPTQ
Ga0334901_10170142F071725AGGAGGMKTLLNKPESEYLNLGSLDQELSWVLKIYSSGKINDLIYDGLLLYAHDEEIKAIREKLEKKEINEVGLFQELEKLSKVESLPG
Ga0334901_10170144F093482AGGAGGMEERTLDSLWEKIEKENPVLWAQMDRFYGPMSKKILLMEWNRVKHKCKKDWRFEKLIDDWLIQSRLRKHGGKCLFEHKKRSRA
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