NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334893_1005318

Scaffold Ga0334893_1005318


Overview

Basic Information
Taxon OID3300033161 Open in IMG/M
Scaffold IDGa0334893_1005318 Open in IMG/M
Source Dataset NameSludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_09_05-R3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6635
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (90.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Atribacterota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Sludge → Sludge Microbial Communities From Methane-Producing Bioreactor In Wageningen University, Netherlands

Source Dataset Sampling Location
Location NameNetherlands: Wageningen, Gelderland
CoordinatesLat. (o)51.9691Long. (o)5.6654Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F071725Metagenome122N
F072892Metagenome121N
F076577Metagenome118N
F093482Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0334893_100531810F093482AGGAGGVEERTLDELWERIEKEDPVLWAQMEKFYGPMSKKILLMKWNRVKHKCKKDWRFEKLIDDWLIQSRLRKHGGKCLFEHKKRSRA
Ga0334893_100531812F071725AGGAGGMKTLLNKPESEYLNLGSLDQELSWVLKIYSSGKINDLIYDGLLLYAHDEEIKAIREKWERKEINKVGLFHELEKLSKVESLPG
Ga0334893_100531813F076577AGGAGGMFWPENKVISLMEIVFHFGAINYELNNGKKIREMWKEFKENCIDKRLKYINPDPRCTHPVNLDVIDYCWGYARKIDKGEEIGMEELCEGCEFFREEVKNENPTQ
Ga0334893_100531814F072892AGGAGGMDINLLKTISTRLFGLYSQFKSIVSDLETNNTLDNREWAGELLNNLATELYYEANCLTDVLYPPRKEEKDETMFKIDGIIDAERNPMSEDEFFELFIKWAEENKLQFGGGIGAYREEEEDVLAGK
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