| Basic Information | |
|---|---|
| Taxon OID | 3300032955 Open in IMG/M |
| Scaffold ID | Ga0335076_10368541 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1322 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Florida | |||||||
| Coordinates | Lat. (o) | 26.5059 | Long. (o) | -80.2517 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F011014 | Metagenome / Metatranscriptome | 296 | Y |
| F031305 | Metagenome | 183 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335076_103685411 | F031305 | N/A | MAVEFPVEHQALAAIFANLLRNAQAAIAGQADARVIVRVDRRRDVTGRQEVGLYVGDSAAAPLTLEAIEARESGRGLAIVRDLVRKWRGHMIVQTEPAPFTKLVGACFPA |
| Ga0335076_103685412 | F011014 | GGTGG | MLPRVRPRFVVCEDGAEYRDRFQRFLGGAFEFLAAADYATAEAAAAGAHGLLLDLDFRRTPPDRLVAEGGPAPQPLSDGERRRLAGSQGILILRLLRAAGVALPALLFADFDDPEQARFLEQTLAPLTIVSSRAGLREIAALMHAAVGELSDAV |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |