NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335076_10001309

Scaffold Ga0335076_10001309


Overview

Basic Information
Taxon OID3300032955 Open in IMG/M
Scaffold IDGa0335076_10001309 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24048
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (81.48%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5059Long. (o)-80.2517Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000138Metagenome / Metatranscriptome1954Y
F002248Metagenome / Metatranscriptome578Y
F004964Metagenome / Metatranscriptome417Y

Sequences

Protein IDFamilyRBSSequence
Ga0335076_1000130911F002248GGAGGMDRRRQQRVFVELPVKIWGMDAHSRPFMQPASLRTISGRGATLQGVDAQLRPGDVVDVQYQGTKAQFRIVWLGRPGTEMQGEVGVENLSKDVQLWDIDPLRCAVSTGQG
Ga0335076_1000130914F004964AGGAGGMCPACAASAGVMIGGVLSTGGVTALVARVLGKKKNTKSDSKKER
Ga0335076_100013093F000138AGGAGMHMQLMNSLRVPFGTLINYIPVIATIVTTFFSVILARATLRYVEATDKGLALAREEFEREWSPDLHIKIERVSATEARVIVTNLAKTSVLLQLLQLRKLSHAMPFERWRLNDPLVGGMTWNDEIGRRILACSGQEFEGPIAAAMTFYAAGRMFRTDWFRSQICVRDGRIIRIEPSNMPTRRVRQVERKGPERRREFAQDVTADIPPESINTKPDESFFVTGA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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