NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335072_10103376

Scaffold Ga0335072_10103376


Overview

Basic Information
Taxon OID3300032898 Open in IMG/M
Scaffold IDGa0335072_10103376 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3634
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5059Long. (o)-80.2517Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002623Metagenome / Metatranscriptome542Y
F008310Metagenome / Metatranscriptome335Y

Sequences

Protein IDFamilyRBSSequence
Ga0335072_101033761F008310N/ARSGLYLFDGGEPTKISQEIQPTWDAINWQYGQLIWVQVDTQHKHILIGVPMGSATQPNQVLMLDYTEGFGDPLVAMLTAPERSRKWAPWMISANSCGLIERSNGVAQVFLGSNNSSGKIYALTAGAYSDDGVSINSTYATAFLAATGLSGRNLFGYLTAYVQGLGSLTLSALTPGDASTISLGSWSLASPASLDMEQFTNVLAERASYQFGTNAVGSWFSLTKLVPWAKPDPFAIVRGGN
Ga0335072_101033764F002623N/AVLVREYIDSDFDALRRMHARQGFEYTFPDLADPIFVSKLVVENGDGRVAMASLARLTCEMYLLMDREEARFPGAGNPRERYLSLLALHRAGERDLLARGLEDVHAWLPPPIARRFGRRLESLGWIRDDVWTPYCLRLREK
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