NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335072_10080805

Scaffold Ga0335072_10080805


Overview

Basic Information
Taxon OID3300032898 Open in IMG/M
Scaffold IDGa0335072_10080805 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4225
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5059Long. (o)-80.2517Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002929Metagenome / Metatranscriptome520Y
F028635Metagenome / Metatranscriptome191Y
F066447Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0335072_100808051F002929N/AEKEGGQAMSQSFRAVSEIWNAHSSCFIEPEKLIVLLHDLAARVGSASDEHGYGDNQVVWLENGRKVLDYMEADERFSAASFEDSLEEQGIAVNKTDLIALIGNMQSLSKQWRSSIGKHGELIFYIDLC
Ga0335072_100808055F066447N/AMAHRIACSCVTCPKCGIWVVIPQNQLALSKEKSLAICPASECGKEFEFQASETRVFEVPLPLFERRHFYRSELQDGGR
Ga0335072_100808056F028635N/AMASAGRRLVWWDRDVDRTGKPIRPDVRLAANEIWEQACHRTHVLLADDEPAAELMEYTVAQVSRYLDRIGASPSTRKHGLLSIAFCRTLRRYAAKSSRLELVGGSDELSSYNSDNAWVSQVNTRLDLERIIRQLGERNAAVLTLRAAEYEWKEIAQLFGVSAAAIRNAFWREIGRIRCGIRSM
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