NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0335072_10000017

Scaffold Ga0335072_10000017


Overview

Basic Information
Taxon OID3300032898 Open in IMG/M
Scaffold IDGa0335072_10000017 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)398195
Total Scaffold Genes427 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)305 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5059Long. (o)-80.2517Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041551Metagenome / Metatranscriptome159Y
F070786Metagenome / Metatranscriptome122Y
F089969Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0335072_1000001726F070786N/AMSRTKQIHVWPNHIRVAHLDLVLPRARQEPVAQSLRTLQRMGLDVRPSNVELHDGVRTG
Ga0335072_10000017293F041551GGAVAVPTVPDAPAAPRRRRLSKNARIGLGLLFTLVGLFLLADALPSDPGPLAHLLPVVGAGVVALWVGGILMGIGSRS
Ga0335072_1000001781F089969N/AVPLRDTVFVPGLVSAVFYRRRPTRLQITLGIAFTVVVSGLLGYVQDAGTSRVWENVTLAIVGGMVLYLGILAYLEYVYFPKREKLAPPT
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.