| Basic Information | |
|---|---|
| Taxon OID | 3300032895 Open in IMG/M |
| Scaffold ID | Ga0335074_10000742 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 45191 |
| Total Scaffold Genes | 42 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 31 (73.81%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Florida | |||||||
| Coordinates | Lat. (o) | 26.5059 | Long. (o) | -80.2517 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F028365 | Metagenome | 192 | Y |
| F054509 | Metagenome | 139 | N |
| F072976 | Metagenome | 120 | Y |
| F079487 | Metagenome | 115 | Y |
| F100107 | Metagenome | 102 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335074_1000074232 | F072976 | GAG | VSAVSAPPPSPAQVTLSAHAVEQYRDRVKPGLDPDGARAELEQLCALGLITTQAPGWVNAARPAAYYLLLGDQIVLPLAPQAHAWVATTCVAQRTLTRARRAAESARRASIAARKRALRGTRH |
| Ga0335074_1000074234 | F054509 | GGA | VSEPLISTQTANEQLRRADERWAAAVRGLRPYGERLLELADAAEHESRALLLSDLANVKWNPRPGARNVRLAYEVEEDSGRPGPRELWAKFDRAVKQLGVALEGESIRAIADAFSQLSAHTRQIADAIALPAAAEEDPSTGRRAG |
| Ga0335074_1000074237 | F079487 | AGGA | VNKPDKPKPSGRRIALRPLRGAGRHFRSNLVAYLALVVAVTSGGSYALAATASNGTIGVCVDKGTSVMHLAKHPRCGRGQTRIGLSSALDRPTVSAWAASNEAGDIVGGAGLSISHVGVGVYNITLTAASCREAANNAPVVSASDTEPPGGQATTTFPVAWTRPTSTGIEAFTVYTGVVVSGAFQPKDESFDFTDSCT |
| Ga0335074_100007424 | F100107 | GGCGG | MSRAAEAMIAAKAKRNEHKRESVLEVIRQMVEEMDPALSNYSEIARRAGVHRNYVAGRFAAEIELAQMEVNRRYATGTAYRHSMSVASLRAERTMFREQAQAQAKELARLRKRLGIELGREVAVEHLGLDQTPELVALRDANERLSARVTDLEIQLRDAQEDLEAARRTNTQLLRELNGARPNDPSRNRTS |
| Ga0335074_100007428 | F028365 | N/A | LITPDAIYRQLARPWPADELAERYQAAYERGARDLPADEDPPECPITLLATAIPRLISLAVAANVLHLLPTTTHDGAAIAQELIATIDATATGSLHRTHLALQADGESRGYDADEWLPLVYEQAADWLQHASAAADPPPAIEHAQQAGRFAALAIGALDRDAPTVPEAITDCLAHLLFTCVFADAATRSRRGG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |