NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335070_10000753

Scaffold Ga0335070_10000753


Overview

Basic Information
Taxon OID3300032829 Open in IMG/M
Scaffold IDGa0335070_10000753 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36788
Total Scaffold Genes51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)40 (78.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5008Long. (o)-80.2398Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010178Metagenome / Metatranscriptome307Y
F021584Metagenome / Metatranscriptome218Y

Sequences

Protein IDFamilyRBSSequence
Ga0335070_1000075342F021584GGAGMDPTQVDDNFDRQWFSYVLDRVVPENAVQDPNQLQILADADFEWWWLLASRTSNLLKVLITEQATGRQFIGTTASAVSGAGAFNGINIDLLAGTALATAAFPLAVPFVMPATRTYSVLFTDTSGAPNTVELVFSGFKLWQKPKA
Ga0335070_1000075343F010178GGAGGMVNKKYASRFTSRFAGCREIEEKEVGRPRLSSLRTNPIIAGQLEYLVQPIYDFYGIAVATAVTKQSLFAQPIGASYTPSGGAAFVKTLYHTNLVQPGMLDAPKKMLVKAISVIVRSDVAPQDLVAFIGQTLCQLQISGKDYWTGLVSKCPAGGGAHTQNISTQTLAAGGTISNAGSNGIPWTQNVNTITDDQPQVPGLPPMDPILGQLIEQQQNFFVTLDPTITGSAAFTTLAAAPATQFVGTGLNVHVYLEGVLMRAVL
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