NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335080_11362363

Scaffold Ga0335080_11362363


Overview

Basic Information
Taxon OID3300032828 Open in IMG/M
Scaffold IDGa0335080_11362363 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)707
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018824Metagenome233N
F040669Metagenome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0335080_113623631F018824AGGAGGMATTLDVPVAPKKEKVKRRSRRGNPSTAENIRFFVGKPCRNKEAPQLEREVASEAEGLVAAFKTDGSLFLLSEFTVMQRIERGRVMLGKEPTAAASQRVSTVNAS
Ga0335080_113623632F040669GAGGMTAATDANWAPLEARLNGDVEVIREFMWMFGDKDTGVEYFKHSITRRYLLLHRDGRCFQQSLNGLVEVDFGTDLRRVREHLEEGR

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