Scaffold Ga0335080_10272660

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0335080_10272660

Scaffold Ga0335080_10272660

Overview

Basic Information
Taxon OID	3300032828 Open in IMG/M
Scaffold ID	Ga0335080_10272660 Open in IMG/M
Source Dataset Name	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1844
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location Name	USA: Florida
Coordinates	Lat. (^o)	26.5065	Long. (^o)	-80.2537	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F046997	Metagenome	150	N
F058854	Metagenome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335080_102726601	F058854	GGA	MWLCVLCLFTSAWKSEAEIIDHLNARWQGCAWQANRLELSGLTYQGALFPLITQGPGAFSLPSGAFVLRLHVLPLNARDSEPILVLWGRIADPRDKPLARLFLRKGRLVWVCPIDAKADSLFDAPKEVELETRELTPGLWATVDVLINPLPYQQTFGWNLEMNHPQDPAKPSGKPLHLARQLTSADWALQK
Ga0335080_102726602	F046997	AGGA	VFTTFAYRTLSLIGCSLALGAAASPLTVGDVRTERDSIPRALAQEKAEAIAIFRASQQPLLWLRAMSGISCIENKLQSTPTNAAAETSALLLTLGDKKLSLHADVLKKSYTACQPTNGLPLYVDRNRRRAPETYVDPEILKGGVNILTLKGTNQVPACLSGEALENYLQLRCDQKLQAGDYWRELHAQKLDDEQLARLRYYDYLDTHVALRSVPVYQCMEIRSRNH

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