NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335078_10001762

Scaffold Ga0335078_10001762


Overview

Basic Information
Taxon OID3300032805 Open in IMG/M
Scaffold IDGa0335078_10001762 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32719
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (83.87%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000042Metagenome / Metatranscriptome3762Y
F000309Metagenome / Metatranscriptome1327Y
F001829Metagenome / Metatranscriptome629Y

Sequences

Protein IDFamilyRBSSequence
Ga0335078_1000176210F000042AGGAGMTNIKFVAKVSHSGARAPAYVQRIDRTPVQMTTNRKLALMMGRFTAEAAKSIQNSRCIPELVPVLVNA
Ga0335078_1000176213F000309GAGMNPNENLERILESAIVISWADLTRGTPAGLIHVEYGFAAGGTLDYLKVWSSLSPGHWLLACEYWMSSSTFQGTGISFENGYQSDGLAHVLGFIMQHQDAFVLPPNLGRQGLLQISTPTPEESTAAAASVNRAFDRLGSVLPEPALA
Ga0335078_1000176216F001829GGAGMKKQYLHLSAYRCDMCRGPVIAGWLGVRENPISKETDIRQVGAICISCGHRQDNATEPARTRHLLPMEWEPADAIDPHHLTTAFVEALNRAELH
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