NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335078_10000738

Scaffold Ga0335078_10000738


Overview

Basic Information
Taxon OID3300032805 Open in IMG/M
Scaffold IDGa0335078_10000738 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)49989
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (76.60%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000151Metagenome / Metatranscriptome1897Y
F000174Metagenome / Metatranscriptome1764Y
F101563Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0335078_1000073816F000151GGAGGMEGNGSNGSESVMHSRDPHVQQVVKAAQEELQHLLRQRAEIMKRIGTVKQTIAGLANLFGDEVLNDQLLELVDRKSGGRQPGFTKACRLVLMEAGRPLAAREVCERIEQRIPTLLVRHKDPLASVTTVLNRLVDYGEARSVPRESGRRGWEWIADSSDTPLVPSQEHRSASGI
Ga0335078_1000073817F000174AGGMRNVYEVLRQKELELARLEKEVEALRVAAPLLSDEKDNLADSASKPTLASSTTTQQPIRIPQPAAPAPQPARAAGWEDTAKRWP
Ga0335078_1000073831F101563AGGAGGMKKYGPSVFFLAILAIAITLACGSSPRILQSVSLSPPTADAQGSPVQFTATGYFNEQPSPVKLPTANWGACYGNQPTTAVSVNTDGLAQCAAGAVGAYTVWAYAERGGDSCGPAGTVPANPCGGAGECQVTGIAQLTCP
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Institute for Fundamental Biomedical Research
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