NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335078_10000734

Scaffold Ga0335078_10000734


Overview

Basic Information
Taxon OID3300032805 Open in IMG/M
Scaffold IDGa0335078_10000734 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)50050
Total Scaffold Genes48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (68.75%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000595Metagenome / Metatranscriptome999Y
F001765Metagenome / Metatranscriptome639Y
F048481Metagenome / Metatranscriptome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0335078_1000073430F048481N/AMGLPPEGALNLAAWDMIRDLVSAEPSLNEAAWEGLRGIVGLLGSGSDESTAPGAWAKYRRAG
Ga0335078_1000073436F001765AGGCGGMMKEMPYISEHLTSLRQEIADLRNLNARMSEKGAHTALDQTALELRTNRLREIKQELSQMLNRPNDPKAWWERTRKSQQTT
Ga0335078_100007349F000595AGGAGMDGLTGLAAVIMIFGMPTAALAMYTFYRVRKLRTEERLAAMQRGVNVPMQPELSESARSRRAGILLVAGAIGYMLTFSIIARYEPDALMAAAFGAIPFALGLGYFLDSALIRRDARAS
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