| Basic Information | |
|---|---|
| Taxon OID | 3300032805 Open in IMG/M |
| Scaffold ID | Ga0335078_10000109 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 144268 |
| Total Scaffold Genes | 146 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 108 (73.97%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Florida | |||||||
| Coordinates | Lat. (o) | 26.5065 | Long. (o) | -80.2537 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000675 | Metagenome / Metatranscriptome | 941 | Y |
| F000725 | Metagenome / Metatranscriptome | 918 | Y |
| F000882 | Metagenome / Metatranscriptome | 849 | Y |
| F000949 | Metagenome / Metatranscriptome | 823 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335078_1000010914 | F000882 | N/A | MAQEILSLAVWEPVAGREAASLATIHELSAIVSNKGYGRDLLYRDRESHYIFLRYWKSEEARKAALEDPDMLRCWAKLGNEIEIVKVYETLAEVAEI |
| Ga0335078_1000010966 | F000949 | AGGA | MNHGQHLRDVWVYGLAFLFGIGIGWADVVVDDLLFTALLMVATCMLLGVLRRRWAWRWVVAVGIFVPLTELGAYLLLTLKPTRAQIYASFLVFFPGIAGAYGGSFLRSVVDNLREGK |
| Ga0335078_1000010970 | F000725 | N/A | MTQALKTLRAVQWSLLVSILLYAALGEFVGPRVGRVDPTLSYIFSSLAVGIVGTIFVVRRTLVQQAAASLATHPEDSLSLNHWKTGYVVTYALCEALALFGLILRFRGSQWQQSLLFYAGGFVLLFFFRARQPVAVATAPET |
| Ga0335078_1000010987 | F000675 | GAGG | MTNDSLDERLIPPYQCRDCGSEIGFRSRRRNFTERYLLPLLLLQPVRCGECFRRDYRLIFTRVRPRLSDSLKMEPRKQSATSNRNVA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |