NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335078_10000070

Scaffold Ga0335078_10000070


Overview

Basic Information
Taxon OID3300032805 Open in IMG/M
Scaffold IDGa0335078_10000070 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)191802
Total Scaffold Genes171 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)115 (67.25%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000812Metagenome / Metatranscriptome881Y
F002139Metagenome / Metatranscriptome590Y
F005654Metagenome / Metatranscriptome394Y
F042507Metagenome / Metatranscriptome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0335078_10000070123F005654GGAMNEANGLGRQRVRNGAERPAGSAAYTAKDFQLEVLDKLEEMQGLAESRDESWNKKLEAVKEQRLLRFDSRTLIALAAIALSVSGYVIEDARNSARQDSEIESTKARVMRLEQIATANTEGRIRTEVQLGELREGQNEIKAMIQAHDIATKRSLPRK
Ga0335078_10000070160F000812GGALSQDLSNPPAGPKPRRWSVIAAGLLLLALAFVVIYTTRPAFLSPLALVVVAAIGLAALLLQLRLRKDLTNDVRAPLWLNVLGLLFAIAAVFADLLHMRANFMIAAALCAVACFAISGVKVIHSLRKQRT
Ga0335078_1000007019F002139AGGAMTNRVSYAPQDFQKMCKQAERDHESKKLLELMERVKRQIAERENPGVKTETSKHPAKRMSTESGYLRMPSRSVPFER
Ga0335078_100000708F042507GGAMRILNAASRRGLDLPSVVAEAGERDHQVTLALDVNQKQVGQLYREWYSIADVIHVGSGAAHAAEWSSHHAPAGVRLEESRAAARA
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