NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335078_10000022

Scaffold Ga0335078_10000022


Overview

Basic Information
Taxon OID3300032805 Open in IMG/M
Scaffold IDGa0335078_10000022 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)306708
Total Scaffold Genes257 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)189 (73.54%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000299Metagenome / Metatranscriptome1341Y
F000812Metagenome / Metatranscriptome881Y
F003354Metagenome / Metatranscriptome492Y

Sequences

Protein IDFamilyRBSSequence
Ga0335078_10000022131F000299GGAGMENKQGGNGWSKPSERNEMGHVQEVVRSAQEELHTLLRQRAEIMKRIGTVKQTIAGLANLFGDGVLSEELLQLVDRKNNGRQPGFTKACRMVLMEAGRPMTARDICDHLNKTLPALLAHHKDPIASVTTVLNRLVDYGEAQAVAGNNGRRAWQWMAENATETSGNEVHLAAAS
Ga0335078_1000002285F003354GGAMTLKSALQDVRETTLAAVSGLLGKLAYLASLRGTRGHYAHWGLASVYGAESSERALRSAHTEVVTAVLRTPIESLEADLRLSSRDSGFAPVVYLQKLRERFEVLLPGGKTDSPAADHLNSVLVALSSLQKSRGRATRSTS
Ga0335078_100000229F000812GGALPDAASNPATAPKPRRWTVFAAAFLLLALALVVIYTSRRAFMSPLALVVVAAIGLAALLLQLRLRGDSGKPGPVRLLLNGLGILFAVAAVFGDRLHLATSSSRMIALGAVVCFALSGIVVLRALRKPRG
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Institute for Fundamental Biomedical Research
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