| Basic Information | |
|---|---|
| Taxon OID | 3300032783 Open in IMG/M |
| Scaffold ID | Ga0335079_10009792 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 10917 |
| Total Scaffold Genes | 13 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (92.31%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Florida | |||||||
| Coordinates | Lat. (o) | 26.5065 | Long. (o) | -80.2537 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000512 | Metagenome / Metatranscriptome | 1064 | Y |
| F000696 | Metagenome / Metatranscriptome | 931 | Y |
| F000739 | Metagenome / Metatranscriptome | 913 | Y |
| F000885 | Metagenome / Metatranscriptome | 849 | Y |
| F001619 | Metagenome / Metatranscriptome | 662 | Y |
| F006125 | Metagenome / Metatranscriptome | 381 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335079_1000979210 | F001619 | GGA | MLNWFKKFFQTRYVGLLEGEVLRLRAENRALTNSLLGTAGFPPVDFPQTPAAQPLPRVRKRSWHQIQAWRESDAAREAASSLDDRVEARPNGSLRHS |
| Ga0335079_1000979212 | F000885 | GGAGG | MATASTTSAHAQFIGEITQICGVISAVAGLVLSLHHWPAAAALLGGGVAFSIGKKLRSQ |
| Ga0335079_100097922 | F006125 | AGGAG | MPITISLSPINVDSSASNFVSAIASLSFSGNYPTGGDALDFTQIADKLPSTQIVQAIAESQNGNSGYYVPVQGSALNTWKLKCLQGGGTEISAGAYPSSVTSDIVQLSITARKLL |
| Ga0335079_100097923 | F000696 | GGAG | MPVVGSSAYNTAGQITALVRSLLNDAQGNLFTDTVLLPYANSAYRKVQRALGNSGAGGFLSDDVLLVVPAVTTPDASLQVSITDSTAPPNQLPTDLLVPVKLWERPNGSSDDFAEMVDLTRHGGLPSREQDLVLSVWEWRNDGIYFLGATQDTQIRLRYLKAYPDFTDATSPVLVRNSQEAIAYATAALAGWARGSPLSEKWDDAAADAMEDLIVQAVRREQQSSRRRRPFSSRSGYTPF |
| Ga0335079_100097924 | F000739 | GGCGG | MTLSRLEIWLKGMLAAAVSGAAGGILTGFAAVGIDPQHFNLQAGMGATFRIGLAAALINAVIGVAAYLQKSPLPTGD |
| Ga0335079_100097926 | F000512 | GGAG | VRNLSSCGRNRRQRGILRCAQDDVRHVQTATQVVILRETHETPENVARRLELAGGHNPLGEPNYRAVWGWNRLAWIGGKFEDRDEHGELLRERFELRREPKYPAVNRWHIERWLPPETYGSPLRWYAQTVELANGQSIHALGPYPSRGEYELCFTLETPQGNFVQLTPTIAEHIARAIECSRRISPAAKRTALYEHQGREDRAYESWAYDLLDDAVPAFHKQAFVTAAGG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |