NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335079_10000168

Scaffold Ga0335079_10000168


Overview

Basic Information
Taxon OID3300032783 Open in IMG/M
Scaffold IDGa0335079_10000168 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)77005
Total Scaffold Genes81 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)61 (75.31%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000534Metagenome / Metatranscriptome1044Y
F001318Metagenome / Metatranscriptome724Y
F032004Metagenome / Metatranscriptome181Y

Sequences

Protein IDFamilyRBSSequence
Ga0335079_1000016827F001318GGAGGMKKLAFMLSALILVSLAQAQVSSANTPAGTQNESEWKLWHEGKPEDRMFFPKDMFWGWAQFDLSPPHNEIDPNLCAGNAYNYGGVNAPCNMFARYMISGILEVRPFGRGPLRRLMVWGAPTFLFGRNVPKTLYTWSMDAIGIEHSWGAGIYLNKGFEFRVTQHFLFDRLGARDTFLGPADLGNNGPWGRYMSVGVRKSFGTRRW
Ga0335079_1000016828F000534AGGAMPQEISVSYQAIKSKVYRLIDALVVGEKSEAEVQESVRRWWALIHPADRPIAQKYLLMVLGRSNSALDAMGAELLSVSGCEPPPVRMAEALPTKRMRLMERIMKETSVRTAI
Ga0335079_1000016873F032004N/AMKTPWVCLAILLASNVACNKSGSPATATDSATPKTPDAVQIKLQEYAGASATNCGRLEVGASPAESKGASDCAMQASQGKKPFYVAYDMPGMVVGVAGNAEGKLFTIHAQGGSVESGDCPSELRVAASGRVTCFSPGDMGSMGAGHTAIPPGMPNPHAAPK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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