| Basic Information | |
|---|---|
| Taxon OID | 3300032783 Open in IMG/M |
| Scaffold ID | Ga0335079_10000006 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 406939 |
| Total Scaffold Genes | 336 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 203 (60.42%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Florida | |||||||
| Coordinates | Lat. (o) | 26.5065 | Long. (o) | -80.2537 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000132 | Metagenome / Metatranscriptome | 1972 | Y |
| F000214 | Metagenome / Metatranscriptome | 1570 | Y |
| F000477 | Metagenome / Metatranscriptome | 1097 | Y |
| F000725 | Metagenome / Metatranscriptome | 918 | Y |
| F000949 | Metagenome / Metatranscriptome | 823 | Y |
| F011245 | Metagenome / Metatranscriptome | 293 | Y |
| F077547 | Metagenome / Metatranscriptome | 117 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335079_10000006128 | F000725 | N/A | MTRVLRTLRVVQWSLLISILLYAFLGERIGPGVHSVDPALSYIFSTLAVGIVGTIFVVRRTLVQRAEASLASRPDDALSLGHWQTGYIITYALCEALALFGLVLRFRGSQFQQSVLFYIGGFVLIFFFRPRQPAMPPGT |
| Ga0335079_10000006134 | F000949 | GGCGG | MGTGWVDVAVNDLLFTALLVLASCMMLGLLRRRWPWRWVLVVGICIPITEYAAYLFWTMKPTRAQVYGSFLAFFPGIAGAYGGSFMRGVIDHLREGG |
| Ga0335079_10000006200 | F077547 | N/A | MALELDAWLKTGPEAPDLQEAPGGWHKVFHSFTICGEDECIKTVFTIYAPGKPRRNSVDLDEWEKRAPNTGEP |
| Ga0335079_10000006274 | F000477 | AGGTGG | MATTKKFTPEIDADLYDKLVETAERNGQTKRYVLEEALRFYLQNVVPSQHLVRREVMDAFEQSVASNRELLERLAK |
| Ga0335079_10000006294 | F000132 | AGGTGG | MLIDKLAAGVVQVQTPLGPRYVVPSFAQRVYLLWMFRNFPILPHAVLSRRQQRMIDRMCSEQRFASIAYVDHMEEAPVIGTIEHRPPMPRQLPPRRPAASESSDGLAAEARQRP |
| Ga0335079_1000000652 | F011245 | N/A | VSQRAAAKQKGFARIAPVVVILFLVASGALAAPQYQDRDHDRDHDRNRFGDRTIFILSYERTTRDFGGGNGGRPSPDAQCEPGFVAVGFHVQTGEFVNQAWLDCAPMRSDGSLGEERRITTRTGSPGGRPISDAMCPDGLALRGLRGRTGASIDEAAGECSQVREMSERDNPRTELTQPVMRPRPGGRPSEAQCPAGSVVTGFRSMSGEYMDHLWIVCSELRRTY |
| Ga0335079_1000000664 | F000214 | AGG | MKNVYEVLRQKEMELTRLEKEVEALRLVAPLLSEEGKEAISDMVKPALATAVGGPQATARIPVAAPPSIPAPQPVRAAGWEDTAKRWP |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |