NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335082_10000073

Scaffold Ga0335082_10000073


Overview

Basic Information
Taxon OID3300032782 Open in IMG/M
Scaffold IDGa0335082_10000073 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)95892
Total Scaffold Genes100 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)86 (86.00%)
Novel Protein Genes11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)11 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5052Long. (o)-80.2345Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014295Metagenome / Metatranscriptome264Y

Sequences

Protein IDFamilyRBSSequence
Ga0335082_1000007316F014295GAGVTLIPPVLVTVSERDLLLPTVTLPKLRLAGLAPSVPGATPVPDRGMVNVGFEALDVRVRFPLAPPADDGVNETVKVALWPAVKVTGVVIPLKLNPEPLTAT
Ga0335082_1000007317F014295GAGVTSVPPVLVTVSERDLLLPTVTLPKLRLVGLAPSVPGVTPVPDKGMVSVGLDALDVMVMFPVVLPADDGANETVKVALCPAVKVTGVVIPVKLNPLPLTAT
Ga0335082_1000007318F014295GAGVTSVPPVLVTVSDRDLLLPTVTLPKLRLVGFAPSVPGVTPVPDNGMLNVGFEALDVIVTLPLTMPADDGVNETVKVALWPAVSVTGVVIPLKLKPGPLTAT
Ga0335082_1000007319F014295GAGVTLVPPVLVTVSDRDLLLPTVTPPKLRLVGFAPSVPGVSPVPDNGMLNVGFDALDVIVTLPLTLPAAEGANETENVALCPAVSVTGVVMPLKLNPLPLTAI
Ga0335082_1000007320F014295GAGVTLAPPVLVTVSERDLLLPIVTLPKLRLAGLAPSVPGVTPVPDKGMVSVGLEALDVIVTLPMALPADEGANETLKVALWPGVKVTGVVIPLKLKPLPLTAT
Ga0335082_1000007321F014295GAGMTLVPPLLVTISERELLLPTVTLPKLRLVGFAPSVPGVTPVPDNGMLNVGFEALDVIVTLPLTLPADDGVNETVKVALWPVVSVTGVVIPLKLKPEPLTAT
Ga0335082_1000007322F014295GAGVTLVPPVLVTVSDRDLLLPIVTLPKLRLVGFAPRPPGVTPVPANGMVSVGFDALDVTVTFPLALPADDGANETENVALCPAVSVTGVVMPLKLNPLPLTAT
Ga0335082_1000007323F014295GAGVTLVPPVLVTVSERDWLLPTVTLPKLRLAGLAPSVPGVTPVPDKGMFSVGLEALDVIVTLPMALPADEGANETLKVALCPAVSVIGVVIPLKLNPEPLTAT
Ga0335082_1000007324F014295GAGVTLVPPVLVTVSDRDCLFPMVTLPKLRLAGLAPSVPGVTPVPDNGMVSVGFDALDVMVALPMALPADDGAKETLKVALCPAVSVTGVVIPLKLNPEPLTAT
Ga0335082_1000007325F014295GAGVTSVPPVLVTVSDRDLLLPTVTLPKLRLAGFAPSVPGVTPVPDKGMVSAGFEALDVIVMLPLTLPADDGANEMEKLALCPAVSVTGVVIPLKLNPVPLTPT
Ga0335082_1000007326F014295GAGVTSVPPVLVTVSERDLLFPTVTLPKLRLPGLAPRVPVATPAPDKGIVRVGFDALDAMVMLPLALPADDGLKKTVKFALWPAAKVRGAEIPLMLNPLPLIAT
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